Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B01303
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 1.74%
CheckM Strain Heterogeneity 92.86
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 144
N50 Contigs 26,578 bp
Longest Contig 65,026 bp
Scaffold Count 119
N50 Scaffolds 31,988 bp
Longest Scaffold 119,554 bp
Genome Size 2,074,955 bp
Protein Count 2,070
Coding Density 86.01%
GC Percentage 39.73%
Ambiguous Bases 14
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5366_8#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682354
Country Thailand: Maela
Date 2015-4-22
Genbank Assembly Accession GCA_001330335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,244
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 25
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 1895
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHDH00000000.1