Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers spnIC145
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 87
N50 Contigs 42,655 bp
Longest Contig 122,815 bp
Scaffold Count 84
N50 Scaffolds 48,525 bp
Longest Scaffold 122,815 bp
Genome Size 2,158,343 bp
Protein Count 2,186
Coding Density 86.65%
GC Percentage 39.52%
Ambiguous Bases 19
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5392_6#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682348
Country Iceland
Date 2015-4-22
Genbank Assembly Accession GCA_001330275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source middle ear
Latitude Longitude None
Molecule Count N/A
CDS Count 2,346
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 3
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 67
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHDE00000000.1