Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B02735
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.81%
CheckM Contamination 2.52%
CheckM Strain Heterogeneity 88.89
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 300
N50 Contigs 12,789 bp
Longest Contig 49,384 bp
Scaffold Count 276
N50 Scaffolds 16,914 bp
Longest Scaffold 101,235 bp
Genome Size 2,105,355 bp
Protein Count 2,097
Coding Density 85.76%
GC Percentage 39.76%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5381_1#9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682338
Country Thailand: Maela
Date 2015-4-22
Genbank Assembly Accession GCA_001330155.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,255
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 24
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 7132
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIFC00000000.1