Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers PT1175
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 70
N50 Contigs 56,439 bp
Longest Contig 180,438 bp
Scaffold Count 70
N50 Scaffolds 56,439 bp
Longest Scaffold 180,438 bp
Genome Size 2,189,118 bp
Protein Count 2,207
Coding Density 86.50%
GC Percentage 39.48%
Ambiguous Bases 11
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 6569_4#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1020071
Country Portugal: Lisbon
Date 2015-4-3
Genbank Assembly Accession GCA_001328995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,381
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 28
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGAQ00000000.1