Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers SN36109
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 59
N50 Contigs 68,928 bp
Longest Contig 180,470 bp
Scaffold Count 56
N50 Scaffolds 68,928 bp
Longest Scaffold 210,701 bp
Genome Size 2,042,269 bp
Protein Count 2,022
Coding Density 85.89%
GC Percentage 39.68%
Ambiguous Bases 5
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6289_8#13
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1020020
Country Austria
Date 2015-4-22
Genbank Assembly Accession GCA_001328935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source middle ear
Latitude Longitude None
Molecule Count N/A
CDS Count 2,192
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 3
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 41
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIEX00000000.1