Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers Bir 304
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 233
N50 Contigs 38,334 bp
Longest Contig 202,499 bp
Scaffold Count 168
N50 Scaffolds 59,391 bp
Longest Scaffold 246,657 bp
Genome Size 4,312,521 bp
Protein Count 4,174
Coding Density 89.86%
GC Percentage 65.32%
Ambiguous Bases 115
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6540_8#19
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1019302
Country United Kingdom: Midlands
Date 2015-7-27
Genbank Assembly Accession GCA_001328295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,296
Refseq Category na
Seq Rel Date 2015/07/27
Spanned Gaps 65
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 4004
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIKT00000000.1