Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 9A;1;9A/1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.62%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 134
N50 Contigs 32,638 bp
Longest Contig 129,923 bp
Scaffold Count 97
N50 Scaffolds 60,408 bp
Longest Scaffold 193,902 bp
Genome Size 2,134,220 bp
Protein Count 2,141
Coding Density 85.12%
GC Percentage 39.52%
Ambiguous Bases 6
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5192_8#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA770066
Country USA
Date 2015-4-22
Genbank Assembly Accession GCA_001326515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,321
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 37
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 13339
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIEZ00000000.1