Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 17F;2;17F/2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 66
N50 Contigs 74,688 bp
Longest Contig 203,094 bp
Scaffold Count 65
N50 Scaffolds 74,688 bp
Longest Scaffold 203,094 bp
Genome Size 2,053,291 bp
Protein Count 2,033
Coding Density 86.53%
GC Percentage 39.63%
Ambiguous Bases 6
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5310_1#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA770053
Country Denmark
Date 2015-4-1
Genbank Assembly Accession GCA_001326475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,219
Refseq Category na
Seq Rel Date 2015/04/01
Spanned Gaps 1
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 75
Translation Table 11
tRNA Count (total) 27
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFVJ00000000.1