Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 18C;2;18C/2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 95
N50 Contigs 58,252 bp
Longest Contig 151,122 bp
Scaffold Count 90
N50 Scaffolds 58,252 bp
Longest Scaffold 151,122 bp
Genome Size 2,074,439 bp
Protein Count 2,098
Coding Density 86.51%
GC Percentage 39.68%
Ambiguous Bases 3
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5242_3#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA769994
Country Denmark
Date 2015-4-2
Genbank Assembly Accession GCA_001326295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,264
Refseq Category na
Seq Rel Date 2015/04/02
Spanned Gaps 5
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 296
Translation Table 11
tRNA Count (total) 28
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFKY00000000.1