Salmonella enterica
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers H34
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.83%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 4
tRNA Count 18
Contig Count 136
N50 Contigs 84,212 bp
Longest Contig 264,869 bp
Scaffold Count 90
N50 Scaffolds 174,177 bp
Longest Scaffold 508,007 bp
Genome Size 4,956,711 bp
Protein Count 4,752
Coding Density 87.52%
GC Percentage 52.09%
Ambiguous Bases 23
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5388_1#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA773517
Country United Kingdom:Scotland
Date 2015-4-6
Genbank Assembly Accession GCA_001326255.1
Genome Category Isolate
Genome Representation full
Isolate H34
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,059
Refseq Category na
Seq Rel Date 2015/04/06
Spanned Gaps 46
Species Taxid 28901
SSU Count 1
Submitter SC
Taxid 85569
Total Gap Length 2360
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CVKN00000000.1