Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers 2178
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 62
N50 Contigs 165,784 bp
Longest Contig 361,919 bp
Scaffold Count 62
N50 Scaffolds 165,784 bp
Longest Scaffold 361,919 bp
Genome Size 4,354,956 bp
Protein Count 4,053
Coding Density 90.42%
GC Percentage 65.59%
Ambiguous Bases 2
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 8898_8#58
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1707434
Country Russia
Date 2015-7-24
Genbank Assembly Accession GCA_001325625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,218
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHJB00000000.1