Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pseudotuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pseudotuberculosis
NCBI Strain Identifiers OK6088
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 190
N50 Contigs 55,511 bp
Longest Contig 187,620 bp
Scaffold Count 122
N50 Scaffolds 135,476 bp
Longest Scaffold 340,306 bp
Genome Size 4,850,145 bp
Protein Count 4,295
Coding Density 84.10%
GC Percentage 47.37%
Ambiguous Bases 101
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4840_7#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA859934
Country Japan
Date 2015-4-3
Genbank Assembly Accession GCA_001319885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,461
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 68
Species Taxid 633
SSU Count 1
Submitter SC
Taxid 633
Total Gap Length 2227
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGGM00000000.1