Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pseudotuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pseudotuberculosis
NCBI Strain Identifiers IP32881
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 96
N50 Contigs 114,859 bp
Longest Contig 342,152 bp
Scaffold Count 91
N50 Scaffolds 114,859 bp
Longest Scaffold 342,152 bp
Genome Size 4,921,823 bp
Protein Count 4,406
Coding Density 84.03%
GC Percentage 47.36%
Ambiguous Bases 27
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5139_3#5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA859899
Country Switzerland
Date 2015-4-22
Genbank Assembly Accession GCA_001319705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,539
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 5
Species Taxid 633
SSU Count 1
Submitter SC
Taxid 633
Total Gap Length 98
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIKF00000000.1