Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pseudotuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pseudotuberculosis
NCBI Strain Identifiers IP32921
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 105
N50 Contigs 130,529 bp
Longest Contig 343,597 bp
Scaffold Count 101
N50 Scaffolds 130,529 bp
Longest Scaffold 343,597 bp
Genome Size 4,928,383 bp
Protein Count 4,427
Coding Density 84.10%
GC Percentage 47.40%
Ambiguous Bases 38
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5139_3#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA859897
Country France
Date 2015-4-22
Genbank Assembly Accession GCA_001319685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,560
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 4
Species Taxid 633
SSU Count 1
Submitter SC
Taxid 633
Total Gap Length 70
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIFM00000000.1