Yersinia frederiksenii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia frederiksenii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia frederiksenii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia frederiksenii
NCBI Strain Identifiers 83;38/83;38
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000754805.1)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 60
N50 Contigs 190,838 bp
Longest Contig 407,962 bp
Scaffold Count 42
N50 Scaffolds 339,773 bp
Longest Scaffold 627,633 bp
Genome Size 4,804,157 bp
Protein Count 4,249
Coding Density 86.52%
GC Percentage 46.94%
Ambiguous Bases 29
GTDB representative GCA_000754805.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4821_6#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA859873
Country Finland
Date 2015-4-3
Genbank Assembly Accession GCA_001319585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,298
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 18
Species Taxid 29484
SSU Count 1
Submitter SC
Taxid 29484
Total Gap Length 539
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGCC00000000.1