Yersinia frederiksenii_C
Isolate HQ 16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia frederiksenii_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia frederiksenii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia frederiksenii
NCBI Strain Identifiers IP23047
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001098625.1)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 95
N50 Contigs 99,730 bp
Longest Contig 259,964 bp
Scaffold Count 27
N50 Scaffolds 357,078 bp
Longest Scaffold 858,447 bp
Genome Size 4,946,280 bp
Protein Count 4,494
Coding Density 86.54%
GC Percentage 47.60%
Ambiguous Bases 55
GTDB representative GCA_001098625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4840_7#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA859853
Country France
Date 2015-4-3
Genbank Assembly Accession GCA_001319525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,521
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 68
Species Taxid 29484
SSU Count 1
Submitter SC
Taxid 29484
Total Gap Length 2173
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGBN00000000.1