Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B231;3681/97;3681;97
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 98.83%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 863
N50 Contigs 7,631 bp
Longest Contig 52,634 bp
Scaffold Count 801
N50 Scaffolds 8,022 bp
Longest Scaffold 52,634 bp
Genome Size 3,777,917 bp
Protein Count 4,038
Coding Density 89.63%
GC Percentage 67.78%
Ambiguous Bases 59
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4846_8#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751394
Country Poland
Date 2015-7-27
Genbank Assembly Accession GCA_001319265.1
Genome Category Isolate
Genome Representation full
Isolate 3681/97
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,905
Refseq Category na
Seq Rel Date 2015/07/27
Spanned Gaps 62
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 4050
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIGM00000000.1