Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers K00200539
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.28%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 363
N50 Contigs 27,301 bp
Longest Contig 130,317 bp
Scaffold Count 267
N50 Scaffolds 44,486 bp
Longest Scaffold 144,779 bp
Genome Size 4,323,827 bp
Protein Count 4,277
Coding Density 89.71%
GC Percentage 65.42%
Ambiguous Bases 214
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6505_2#9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA968202
Country Netherlands: Amsterdam
Date 2015-7-24
Genbank Assembly Accession GCA_001318965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,347
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 96
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 6939
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHKI00000000.1