Undefined name (Failed Quality Check)
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers A09901284
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 94.3%
CheckM Contamination 2.49%
CheckM Strain Heterogeneity 10.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,259
N50 Contigs 5,978 bp
Longest Contig 31,560 bp
Scaffold Count 1,138
N50 Scaffolds 6,438 bp
Longest Scaffold 31,560 bp
Genome Size 4,094,176 bp
Protein Count 4,757
Coding Density 89.21%
GC Percentage 65.00%
Ambiguous Bases 122
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4948_5#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA968084
Country Netherlands: Amsterdam
Date 2015-4-3
Genbank Assembly Accession GCA_001318125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,781
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 121
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 16893
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGCY00000000.1