Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers I00300818
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.24%
CheckM Contamination 1.33%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 389
N50 Contigs 22,527 bp
Longest Contig 106,715 bp
Scaffold Count 341
N50 Scaffolds 25,212 bp
Longest Scaffold 106,715 bp
Genome Size 4,293,748 bp
Protein Count 4,307
Coding Density 89.92%
GC Percentage 65.31%
Ambiguous Bases 23
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5237_5#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA968075
Country Netherlands: Amsterdam
Date 2015-7-24
Genbank Assembly Accession GCA_001318105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,430
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 48
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 2871
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGGP00000000.1