Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers J09902073
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 98.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 441
N50 Contigs 16,931 bp
Longest Contig 67,955 bp
Scaffold Count 396
N50 Scaffolds 21,557 bp
Longest Scaffold 70,141 bp
Genome Size 4,271,699 bp
Protein Count 4,266
Coding Density 89.88%
GC Percentage 65.29%
Ambiguous Bases 18
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5227_6#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1706694
Country Netherlands
Date 2015-4-22
Genbank Assembly Accession GCA_001318025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,383
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 45
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 3110
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHZT00000000.1