Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers J09700837
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 98.91%
CheckM Contamination 1.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 420
N50 Contigs 21,000 bp
Longest Contig 68,611 bp
Scaffold Count 377
N50 Scaffolds 24,500 bp
Longest Scaffold 72,786 bp
Genome Size 4,278,482 bp
Protein Count 4,306
Coding Density 90.18%
GC Percentage 65.31%
Ambiguous Bases 28
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5227_5#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1706665
Country Netherlands
Date 2015-4-22
Genbank Assembly Accession GCA_001317925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,384
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 43
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 1659
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIFZ00000000.1