Citrobacter portucalensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter portucalensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers ST63:944526466
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002042885.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 1.4%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 1
tRNA Count 20
Contig Count 239
N50 Contigs 86,515 bp
Longest Contig 455,833 bp
Scaffold Count 239
N50 Scaffolds 86,515 bp
Longest Scaffold 455,833 bp
Genome Size 5,568,249 bp
Protein Count 5,451
Coding Density 87.96%
GC Percentage 51.83%
Ambiguous Bases N/A
GTDB representative GCA_002042885.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 48_S23v.02
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04011451
Country South Africa: Durban
Date 2016-7-28
Genbank Assembly Accession GCA_001317135.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source catheter tip
Latitude Longitude 29.83432 S 30.99865 E
Molecule Count N/A
CDS Count 5,716
Refseq Category na
Seq Rel Date 2016/07/28
Spanned Gaps 0
Species Taxid 546
SSU Count 7
Submitter University of KwaZulu Natal
Taxid 546
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJES00000000.2