Enterobacter roggenkampii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter roggenkampii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter roggenkampii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; x__Enterobacter cloacae complex; s__Enterobacter roggenkampii
NCBI Strain Identifiers ST433:953102574
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001729805.1)
Genome Characteristics
CheckM Completeness 98.78%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 11.11
5S Count 9
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 229
N50 Contigs 58,526 bp
Longest Contig 244,631 bp
Scaffold Count 229
N50 Scaffolds 58,526 bp
Longest Scaffold 244,631 bp
Genome Size 5,259,520 bp
Protein Count 5,045
Coding Density 88.27%
GC Percentage 55.22%
Ambiguous Bases N/A
GTDB representative GCA_001729805.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM131705v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04011448
Country South Africa: Durban
Date 2016-09-20
Genbank Assembly Accession GCA_001317055.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source abdominal fluid
Latitude Longitude 29.83432 S 30.99865 E
Molecule Count N/A
CDS Count 5,219
Refseq Category na
Seq Rel Date 2016/09/20
Spanned Gaps 0
Species Taxid 1812935
SSU Count 10
Submitter University of KwaZulu Natal
Taxid 1812935
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJEO00000000.2