Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers ST167:947385799
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 2.93%
CheckM Strain Heterogeneity 30.3
5S Count 7
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 1,107
N50 Contigs 7,297 bp
Longest Contig 25,103 bp
Scaffold Count 1,107
N50 Scaffolds 7,297 bp
Longest Scaffold 25,103 bp
Genome Size 4,840,021 bp
Protein Count 5,171
Coding Density 88.11%
GC Percentage 51.04%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name v02
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04011432
Country South Africa: Durban
Date 2016-7-28
Genbank Assembly Accession GCA_001316875.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude 29.83432 S 30.99865 E
Molecule Count N/A
CDS Count 5,487
Refseq Category na
Seq Rel Date 2016/07/28
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter University of KwaZulu Natal
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJDY00000000.2