Klebsiella pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae; sb__Klebsiella pneumoniae subsp. pneumoniae
NCBI Strain Identifiers ST2017:950118422
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000742135.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.99%
CheckM Strain Heterogeneity 11.11
5S Count 10
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 154
N50 Contigs 202,113 bp
Longest Contig 654,156 bp
Scaffold Count 154
N50 Scaffolds 202,113 bp
Longest Scaffold 654,156 bp
Genome Size 5,863,520 bp
Protein Count 5,604
Coding Density 87.44%
GC Percentage 56.97%
Ambiguous Bases N/A
GTDB representative GCA_000742135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 29_S13v02
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04011441
Country South Africa: Durban
Date 2016-7-28
Genbank Assembly Accession GCA_001316765.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source abdominal swab
Latitude Longitude 29.83432 S 30.99865 E
Molecule Count N/A
CDS Count 6,006
Refseq Category na
Seq Rel Date 2016/07/28
Spanned Gaps 0
Species Taxid 573
SSU Count 5
Submitter University of KwaZulu Natal
Taxid 72407
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJEH00000000.2