Klebsiella pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Klebsiella; s__Klebsiella pneumoniae; sb__Klebsiella pneumoniae subsp. pneumoniae
NCBI Strain Identifiers ST101:945165838
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000742135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 33.33
5S Count 9
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 175
N50 Contigs 105,246 bp
Longest Contig 373,038 bp
Scaffold Count 175
N50 Scaffolds 105,246 bp
Longest Scaffold 373,038 bp
Genome Size 5,729,804 bp
Protein Count 5,435
Coding Density 87.48%
GC Percentage 57.02%
Ambiguous Bases N/A
GTDB representative GCA_000742135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name v02
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04011436
Country South Africa: Durban
Date 2016-7-28
Genbank Assembly Accession GCA_001316695.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pus swab from leg
Latitude Longitude 29.83432 S 30.99865 E
Molecule Count N/A
CDS Count 5,839
Refseq Category na
Seq Rel Date 2016/07/28
Spanned Gaps 0
Species Taxid 573
SSU Count 5
Submitter University of KwaZulu Natal
Taxid 72407
Total Gap Length 0
Translation Table 11
tRNA Count (total) 85
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJEC00000000.2