Citrobacter freundii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers ST62:944112508
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 4.2%
CheckM Strain Heterogeneity 82.86
5S Count 16
16S Count 8
23S Count 18
tRNA Count 20
Contig Count 850
N50 Contigs 37,580 bp
Longest Contig 148,925 bp
Scaffold Count 850
N50 Scaffolds 37,580 bp
Longest Scaffold 148,925 bp
Genome Size 6,185,966 bp
Protein Count 6,568
Coding Density 87.16%
GC Percentage 51.84%
Ambiguous Bases 379
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM131667v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04011435
Country South Africa: Durban
Date 2015-10-15
Genbank Assembly Accession GCA_001316675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude 29.83432 S 30.99865 E
Molecule Count N/A
CDS Count 6,904
Refseq Category na
Seq Rel Date 2015/10/15
Spanned Gaps 0
Species Taxid 546
SSU Count 17
Submitter University of KwaZulu Natal
Taxid 546
Total Gap Length 0
Translation Table 11
tRNA Count (total) 113
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJEB00000000.1