Paenibacillus_D pinihumi
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus_D; s__Paenibacillus_D pinihumi
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus pinihumi
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus pinihumi; x__Paenibacillus pinihumi DSM 23905 = JCM 16419
NCBI Strain Identifiers JCM 16419
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000422505.1)
Genome Characteristics
CheckM Completeness 94.0%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 106
N50 Contigs 153,395 bp
Longest Contig 488,355 bp
Scaffold Count 106
N50 Scaffolds 153,395 bp
Longest Scaffold 488,355 bp
Genome Size 6,743,471 bp
Protein Count 8,665
Coding Density 83.53%
GC Percentage 48.53%
Ambiguous Bases N/A
GTDB representative GCA_000422505.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM131230v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00000534
Country None
Date 2015-10-2
Genbank Assembly Accession GCA_001312305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,896
Refseq Category na
Seq Rel Date 2015/10/02
Spanned Gaps 0
Species Taxid 669462
SSU Count 1
Submitter The University of Tokyo
Taxid 1122924
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBDI00000000.1