Methylomonas koyamae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylomonadaceae; g__Methylomonas; s__Methylomonas koyamae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylococcaceae; g__Methylomonas; s__Methylomonas koyamae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Methylococcales; f__Methylococcaceae; g__Methylomonas; s__Methylomonas koyamae; x__Methylomonas koyamae JCM 16701
NCBI Strain Identifiers JCM 16701
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 95.02%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 382
N50 Contigs 31,116 bp
Longest Contig 167,909 bp
Scaffold Count 382
N50 Scaffolds 31,116 bp
Longest Scaffold 167,909 bp
Genome Size 4,954,151 bp
Protein Count 6,179
Coding Density 86.21%
GC Percentage 56.05%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM131200v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00000536
Country None
Date 2015-10-2
Genbank Assembly Accession GCA_001312005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,952
Refseq Category representative genome
Seq Rel Date 2015/10/02
Spanned Gaps 0
Species Taxid 702114
SSU Count 1
Submitter The University of Tokyo
Taxid 1294261
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBCK00000000.1