JCM-19050 sp001310455
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__JCM-19050; s__JCM-19050 sp001310455
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Photobacterium; s__Photobacterium sp. JCM 19050
NCBI Strain Identifiers JCM 19050
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 94.76%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 4
tRNA Count 18
Contig Count 116
N50 Contigs 97,993 bp
Longest Contig 301,603 bp
Scaffold Count 116
N50 Scaffolds 97,993 bp
Longest Scaffold 301,603 bp
Genome Size 5,443,264 bp
Protein Count 6,651
Coding Density 85.75%
GC Percentage 50.10%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM131045v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00000381
Country None
Date 2015-10-2
Genbank Assembly Accession GCA_001310455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,220
Refseq Category na
Seq Rel Date 2015/10/02
Spanned Gaps 0
Species Taxid 1460644
SSU Count 2
Submitter Microbe Division/JCM, RIKEN BioResource Center
Taxid 1460644
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BAXG00000000.1