Escherichia dysenteriae
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CO6CE1353
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 2
tRNA Count 16
Contig Count 287
N50 Contigs 99,679 bp
Longest Contig 376,588 bp
Scaffold Count 205
N50 Scaffolds 124,274 bp
Longest Scaffold 376,588 bp
Genome Size 5,504,019 bp
Protein Count 5,344
Coding Density 87.38%
GC Percentage 50.30%
Ambiguous Bases 49
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM130989v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03393395
Country Canada: Alberta
Date 2015-10-9
Genbank Assembly Accession GCA_001309895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude 55.0000 N 115.0000 W
Molecule Count N/A
CDS Count 5,873
Refseq Category na
Seq Rel Date 2015/10/09
Spanned Gaps 82
Species Taxid 562
SSU Count 3
Submitter University of Alberta
Taxid 562
Total Gap Length 4120
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEAF00000000.1