Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CO6CE900
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 5
tRNA Count 18
Contig Count 339
N50 Contigs 109,205 bp
Longest Contig 376,513 bp
Scaffold Count 225
N50 Scaffolds 145,320 bp
Longest Scaffold 376,513 bp
Genome Size 5,571,492 bp
Protein Count 5,424
Coding Density 86.91%
GC Percentage 50.27%
Ambiguous Bases 18
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM130988v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03393398
Country Canada: Alberta
Date 2015-10-9
Genbank Assembly Accession GCA_001309885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical
Latitude Longitude 55.0000 N 115.0000 W
Molecule Count N/A
CDS Count 5,933
Refseq Category na
Seq Rel Date 2015/10/09
Spanned Gaps 114
Species Taxid 562
SSU Count 3
Submitter University of Alberta
Taxid 562
Total Gap Length 6227
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LEAE00000000.1