Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers PARC448
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 75.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 334
N50 Contigs 77,887 bp
Longest Contig 199,220 bp
Scaffold Count 240
N50 Scaffolds 91,918 bp
Longest Scaffold 204,263 bp
Genome Size 5,390,511 bp
Protein Count 5,338
Coding Density 87.13%
GC Percentage 50.50%
Ambiguous Bases 56
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM130956v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03393412
Country Canada: Alberta
Date 2015-10-9
Genbank Assembly Accession GCA_001309565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Culture Media
Latitude Longitude 55.0000 N 115.0000 W
Molecule Count N/A
CDS Count 5,790
Refseq Category na
Seq Rel Date 2015/10/09
Spanned Gaps 94
Species Taxid 562
SSU Count 1
Submitter University of Alberta
Taxid 562
Total Gap Length 5054
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDYO00000000.1