Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers DM18-3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 1.11%
CheckM Strain Heterogeneity 35.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 152
N50 Contigs 86,573 bp
Longest Contig 201,548 bp
Scaffold Count 111
N50 Scaffolds 128,263 bp
Longest Scaffold 353,227 bp
Genome Size 5,093,237 bp
Protein Count 4,846
Coding Density 87.94%
GC Percentage 50.75%
Ambiguous Bases 13
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM130953v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03393388
Country Canada: Alberta
Date 2015-10-9
Genbank Assembly Accession GCA_001309535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Beef
Latitude Longitude 55.0000 N 115.0000 W
Molecule Count N/A
CDS Count 5,201
Refseq Category na
Seq Rel Date 2015/10/09
Spanned Gaps 41
Species Taxid 562
SSU Count 2
Submitter University of Alberta
Taxid 562
Total Gap Length 2129
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDYL00000000.1