Cronobacter sakazakii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
NCBI Strain Identifiers 692
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000982825.1)
Genome Characteristics
CheckM Completeness 99.69%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 9
23S Count 12
tRNA Count 20
Contig Count 104
N50 Contigs 164,215 bp
Longest Contig 350,175 bp
Scaffold Count 104
N50 Scaffolds 164,215 bp
Longest Scaffold 350,175 bp
Genome Size 4,538,507 bp
Protein Count 4,235
Coding Density 87.55%
GC Percentage 56.87%
Ambiguous Bases N/A
GTDB representative GCA_000982825.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130929v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02840976
Country France
Date 2015-10-9
Genbank Assembly Accession GCA_001309295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces from infant with NECII
Latitude Longitude None
Molecule Count N/A
CDS Count 4,349
Refseq Category na
Seq Rel Date 2015/10/09
Spanned Gaps 0
Species Taxid 28141
SSU Count 17
Submitter Nottingham Trent University, UK
Taxid 28141
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOLV00000000.1