Cronobacter sakazakii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Cronobacter; s__Cronobacter sakazakii
NCBI Strain Identifiers 695
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000982825.1)
Genome Characteristics
CheckM Completeness 99.69%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 50.0
5S Count 7
16S Count 9
23S Count 12
tRNA Count 20
Contig Count 135
N50 Contigs 117,058 bp
Longest Contig 266,071 bp
Scaffold Count 130
N50 Scaffolds 127,246 bp
Longest Scaffold 266,071 bp
Genome Size 4,546,320 bp
Protein Count 4,255
Coding Density 87.49%
GC Percentage 56.86%
Ambiguous Bases N/A
GTDB representative GCA_000982825.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM130901v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02840766
Country France
Date 2015-10-9
Genbank Assembly Accession GCA_001309015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source trachea from infant with NECII
Latitude Longitude None
Molecule Count N/A
CDS Count 4,367
Refseq Category na
Seq Rel Date 2015/10/09
Spanned Gaps 5
Species Taxid 28141
SSU Count 17
Submitter Nottingham Trent University, UK
Taxid 28141
Total Gap Length 606
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JOLG00000000.1