Lactiplantibacillus plantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
NCBI Strain Identifiers Nizo2877
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615325.1)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 2.78%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 4
tRNA Count 20
Contig Count 2
N50 Contigs 1,956,412 bp
Longest Contig 1,956,412 bp
Scaffold Count 2
N50 Scaffolds 1,956,412 bp
Longest Scaffold 1,956,412 bp
Genome Size 3,231,771 bp
Protein Count 3,018
Coding Density 83.95%
GC Percentage 44.50%
Ambiguous Bases N/A
GTDB representative GCA_000615325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130830v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04123802
Country Viet Nam
Date 2015-10-8
Genbank Assembly Accession GCA_001308305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source hot-dog
Latitude Longitude None
Molecule Count N/A
CDS Count 3,066
Refseq Category na
Seq Rel Date 2015/10/08
Spanned Gaps 0
Species Taxid 1590
SSU Count 5
Submitter Institute of Functional Genomics Lyon (IGFL)
Taxid 1590
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKHZ00000000.1