Apilactobacillus kunkeei_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Apilactobacillus; s__Apilactobacillus kunkeei_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
NCBI Strain Identifiers LAdo
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.07%
CheckM Contamination 1.09%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 9
N50 Contigs 365,555 bp
Longest Contig 442,335 bp
Scaffold Count 9
N50 Scaffolds 365,555 bp
Longest Scaffold 442,335 bp
Genome Size 1,406,916 bp
Protein Count 1,274
Coding Density 90.21%
GC Percentage 36.58%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130820v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03277032
Country Malaysia:Borneo
Date 2015-10-8
Genbank Assembly Accession GCA_001308205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,273
Refseq Category na
Seq Rel Date 2015/10/08
Spanned Gaps 0
Species Taxid 148814
SSU Count 1
Submitter Uppsala university
Taxid 148814
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXDC00000000.1