Apilactobacillus kunkeei_C
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Apilactobacillus; s__Apilactobacillus kunkeei_C
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
NCBI Strain Identifiers LMbo
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.07%
CheckM Contamination 1.25%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 31
N50 Contigs 76,251 bp
Longest Contig 326,481 bp
Scaffold Count 31
N50 Scaffolds 76,251 bp
Longest Scaffold 326,481 bp
Genome Size 1,560,079 bp
Protein Count 1,408
Coding Density 90.37%
GC Percentage 37.11%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130819v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03277051
Country Kenya
Date 2015-10-8
Genbank Assembly Accession GCA_001308195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,410
Refseq Category na
Seq Rel Date 2015/10/08
Spanned Gaps 0
Species Taxid 148814
SSU Count 2
Submitter Uppsala university
Taxid 148814
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JXDF00000000.1