Aliiroseovarius crassostreae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Aliiroseovarius; s__Aliiroseovarius crassostreae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Aliiroseovarius; s__Aliiroseovarius crassostreae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Aliiroseovarius; s__Aliiroseovarius crassostreae
NCBI Strain Identifiers CV919-312
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 1.08%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 19
Contig Count 27
N50 Contigs 625,830 bp
Longest Contig 828,384 bp
Scaffold Count 27
N50 Scaffolds 625,830 bp
Longest Scaffold 828,384 bp
Genome Size 3,725,379 bp
Protein Count 3,707
Coding Density 87.19%
GC Percentage 58.42%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130776v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03952659
Country USA: Maine; Damariscotta River
Date 2015-10-7
Genbank Assembly Accession GCA_001307765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 3,645
Refseq Category representative genome
Seq Rel Date 2015/10/07
Spanned Gaps 0
Species Taxid 154981
SSU Count 3
Submitter University of Rhode Island
Taxid 154981
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LKBA00000000.1