Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B3405
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 100.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 4,109,988 bp
Longest Contig 4,109,988 bp
Scaffold Count 1
N50 Scaffolds 4,109,988 bp
Longest Scaffold 4,109,988 bp
Genome Size 4,109,988 bp
Protein Count 3,912
Coding Density 90.27%
GC Percentage 67.70%
Ambiguous Bases N/A
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM130762v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03566782
Country Netherlands
Date 2015-10-7
Genbank Assembly Accession GCA_001307625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source respiratory tract
Latitude Longitude None
Molecule Count 1
CDS Count 3,914
Refseq Category na
Seq Rel Date 2015/10/07
Spanned Gaps 0
Species Taxid 520
SSU Count 3
Submitter RIVM
Taxid 520
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None