Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7
NCBI Strain Identifiers WS4202;laboratory strain
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 3
N50 Contigs 5,332,063 bp
Longest Contig 5,332,063 bp
Scaffold Count 3
N50 Scaffolds 5,332,063 bp
Longest Scaffold 5,332,063 bp
Genome Size 5,428,108 bp
Protein Count 5,198
Coding Density 87.43%
GC Percentage 50.48%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM130721v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04103124
Country France: Paris
Date 2015-10-6
Genbank Assembly Accession GCA_001307215.1
Genome Category Isolate
Genome Representation full
Isolate laboratory strain
Isolation Source laboratory strain derived from CIP 106327 (Collection de l Institute Pasteur; Paris; France)
Latitude Longitude None
Molecule Count 3
CDS Count 5,632
Refseq Category na
Seq Rel Date 2015/10/06
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter Technische Universitaet Muenchen
Taxid 83334
Total Gap Length 0
Translation Table 11
tRNA Count (total) 98
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None