Pseudoalteromonas lipolytica_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas lipolytica_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas lipolytica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas lipolytica
NCBI Strain Identifiers UCD-48B
GTDB Type Material Designation not type material
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 2
23S Count 11
tRNA Count 20
Contig Count 69
N50 Contigs 378,150 bp
Longest Contig 751,710 bp
Scaffold Count 69
N50 Scaffolds 378,150 bp
Longest Scaffold 751,710 bp
Genome Size 4,586,948 bp
Protein Count 4,127
Coding Density 89.67%
GC Percentage 41.14%
Ambiguous Bases 76
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130691v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04088200
Country USA: Garbage Beach; Woods Hole; MA
Date 2015-10-5
Genbank Assembly Accession GCA_001306915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seagrass sediment
Latitude Longitude 41.524998 N 70.673098 W
Molecule Count N/A
CDS Count 4,123
Refseq Category na
Seq Rel Date 2015/10/05
Spanned Gaps 0
Species Taxid 570156
SSU Count 8
Submitter UC Davis
Taxid 570156
Total Gap Length 0
Translation Table 11
tRNA Count (total) 106
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJTC00000000.1