Vibrio alginolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio alginolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio alginolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio alginolyticus
NCBI Strain Identifiers UCD-32C
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000354175.2)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 13
16S Count 16
23S Count 13
tRNA Count 20
Contig Count 140
N50 Contigs 282,280 bp
Longest Contig 507,130 bp
Scaffold Count 140
N50 Scaffolds 282,280 bp
Longest Scaffold 507,130 bp
Genome Size 5,319,732 bp
Protein Count 4,811
Coding Density 86.46%
GC Percentage 44.56%
Ambiguous Bases 99
GTDB representative GCA_000354175.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130682v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04088203
Country USA: Garbage Beach; Woods Hole; MA
Date 2015-10-5
Genbank Assembly Accession GCA_001306825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seagrass sediment
Latitude Longitude 41.524998 N 70.673098 W
Molecule Count N/A
CDS Count 4,859
Refseq Category na
Seq Rel Date 2015/10/05
Spanned Gaps 0
Species Taxid 663
SSU Count 25
Submitter UC Davis
Taxid 663
Total Gap Length 0
Translation Table 11
tRNA Count (total) 135
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJTF00000000.1