Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers UCD-JA19
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 2
tRNA Count 20
Contig Count 63
N50 Contigs 435,685 bp
Longest Contig 706,444 bp
Scaffold Count 63
N50 Scaffolds 435,685 bp
Longest Scaffold 706,444 bp
Genome Size 5,200,451 bp
Protein Count 4,905
Coding Density 88.22%
GC Percentage 50.60%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130658v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04054193
Country USA: Sacramento; CA
Date 2015-10-5
Genbank Assembly Accession GCA_001306585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,312
Refseq Category na
Seq Rel Date 2015/10/05
Spanned Gaps 0
Species Taxid 562
SSU Count 11
Submitter UC Davis
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJXZ00000000.1