Bacillus_F vietnamensis_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae_B; g__Bacillus_F; s__Bacillus_F vietnamensis_A
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__Bacillus vietnamensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Bacillus; s__Bacillus vietnamensis
NCBI Strain Identifiers UCD-SED5
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.85%
CheckM Contamination 2.82%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 98
N50 Contigs 236,580 bp
Longest Contig 617,910 bp
Scaffold Count 98
N50 Scaffolds 236,580 bp
Longest Scaffold 617,910 bp
Genome Size 4,316,249 bp
Protein Count 4,395
Coding Density 86.40%
GC Percentage 43.55%
Ambiguous Bases 40
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130585v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04013460
Country USA: Bodega Bay
Date 2015-10-2
Genbank Assembly Accession GCA_001305855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seagrass sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 4,297
Refseq Category na
Seq Rel Date 2015/10/02
Spanned Gaps 0
Species Taxid 218284
SSU Count 18
Submitter UC Davis
Taxid 218284
Total Gap Length 0
Translation Table 11
tRNA Count (total) 107
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIXZ00000000.1