Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Gemmobacter; s__Gemmobacter caeni
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Gemmobacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Gemmobacter; s__Gemmobacter sp. LW-1
NCBI Strain Identifiers LW-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003054195.1)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 94
N50 Contigs 87,409 bp
Longest Contig 231,729 bp
Scaffold Count 71
N50 Scaffolds 105,867 bp
Longest Scaffold 386,493 bp
Genome Size 4,344,434 bp
Protein Count 4,224
Coding Density 91.37%
GC Percentage 64.78%
Ambiguous Bases 26
GTDB representative GCA_003054195.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM130387v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04075706
Country Romania: Movile Cave
Date 2015-9-30
Genbank Assembly Accession GCA_001303875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source enrichment culture inoculated from microbial mat taken from cave lake water sample and incubated with methylated amine as carbon substrate
Latitude Longitude 43.825487 N 28.560677 E
Molecule Count N/A
CDS Count 4,181
Refseq Category na
Seq Rel Date 2015/09/30
Spanned Gaps 23
Species Taxid 1529005
SSU Count 6
Submitter University of Western Australia
Taxid 1529005
Total Gap Length 845
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJSC00000000.1