Niastella sp001302245
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Chitinophagales; f__Chitinophagaceae; g__Niastella; s__Niastella sp001302245
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Chitinophagia; o__Chitinophagales; f__Chitinophagaceae; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Chitinophagia; o__Chitinophagales; f__Chitinophagaceae; x__unclassified Chitinophagaceae; s__Chitinophagaceae bacterium PMP191F
NCBI Strain Identifiers PMP191F
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.99%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 66
N50 Contigs 269,182 bp
Longest Contig 625,555 bp
Scaffold Count 66
N50 Scaffolds 269,182 bp
Longest Scaffold 625,555 bp
Genome Size 6,452,579 bp
Protein Count 5,277
Coding Density 87.44%
GC Percentage 43.44%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM130224v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03894433
Country USA: Maryland
Date 2015-9-28
Genbank Assembly Accession GCA_001302245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source peritoneal pseudomyxoma peritonei tumor
Latitude Longitude 39.29 N 76.36 W
Molecule Count N/A
CDS Count 5,239
Refseq Category na
Seq Rel Date 2015/09/28
Spanned Gaps 0
Species Taxid 1691979
SSU Count 1
Submitter University of South Carolina School of Medicine
Taxid 1691979
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGYU00000000.1