Oceanobacillus caeni
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Amphibacillaceae; g__Oceanobacillus; s__Oceanobacillus caeni
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Oceanobacillus; s__Oceanobacillus caeni
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Oceanobacillus; s__Oceanobacillus caeni
NCBI Strain Identifiers HM6
GTDB Type Material Designation not type material
GTDB Representative of Species True (8 genomes in species cluster)
Genome Characteristics
CheckM Completeness 97.33%
CheckM Contamination 1.22%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 3
tRNA Count 20
Contig Count 209
N50 Contigs 42,610 bp
Longest Contig 165,964 bp
Scaffold Count 209
N50 Scaffolds 42,610 bp
Longest Scaffold 165,964 bp
Genome Size 3,579,090 bp
Protein Count 3,719
Coding Density 82.45%
GC Percentage 35.71%
Ambiguous Bases 1
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM129813v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03891616
Country India: Rohtak; Haryana
Date 2015-09-24
Genbank Assembly Accession GCA_001298135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count N/A
CDS Count 3,518
Refseq Category representative genome
Seq Rel Date 2015/09/24
Spanned Gaps 0
Species Taxid 405946
SSU Count 6
Submitter Maharshi Dayanand University
Taxid 405946
Total Gap Length 0
Translation Table 11
tRNA Count (total) 110
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGTK00000000.1